Detailed information of matrix profile MA0560.1

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Profile summary
Name: PIF3
Matrix ID: MA0560.1
Class: Basic
Family: bHLH
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-seq
Validation: 10797009
Uniprot ID: O80536  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 98 0 527 0 118 0 0 15 116 143 ]
C [ 137 527 0 527 0 0 0 94 222 148 ]
G [ 33 0 0 0 409 0 527 399 131 26 ]
T [ 259 0 0 0 0 527 0 19 58 210 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0560.1 MA0560 1 PIF3 Arabidopsis thaliana
bHLH Basic
MA0560.2 MA0560 2 PIF3 Arabidopsis thaliana
bHLH Basic
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0556.1

ChIP-seq Centrality
-log(P-value): 619.035

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0556.1

ChIP-seq Centrality
-log(P-value): 641.404

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: