Detailed information of matrix profile MA0552.1

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Profile summary
Name: PIF1
Matrix ID: MA0552.1
Class: Basic
Family: bHLH
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 15448264
Uniprot ID: Q8GZM7  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 18 0 112 0 0 0 0 48 15 28 13 22 36 28 ]
C [ 51 114 0 114 1 0 11 14 73 32 40 29 53 37 ]
G [ 23 0 2 0 113 0 103 14 17 27 8 28 0 12 ]
T [ 22 0 0 0 0 114 0 38 9 27 53 35 25 37 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0552.1 MA0552 1 PIF1 Arabidopsis thaliana
bHLH Basic
MA0552.2 MA0552 2 PIF1 Arabidopsis thaliana
bHLH Basic
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0555.1

ChIP-seq Centrality
-log(P-value): 1160.52

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0555.1

ChIP-seq Centrality
-log(P-value): 1210.69

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: