Detailed information of matrix profile MA0551.1

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Profile summary
Name: HY5
Matrix ID: MA0551.1
Class: Basic
Family: Group
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: ChIP-chip
Validation: 18287490
Uniprot ID: O24646  
Source:
Comment:

Sequence logo

Frequency matrix

         
A [ 103 108 52 9 150 0 310 3 1 0 2 4 24 183 94 89 ]
C [ 60 56 55 8 165 317 1 311 5 9 1 1 279 30 62 68 ]
G [ 68 62 30 279 1 1 9 5 311 1 317 165 8 55 56 60 ]
T [ 89 94 183 24 4 2 0 1 3 310 0 150 9 52 108 103 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0551.1 MA0551 1 HY5 Arabidopsis thaliana
Group Basic
MA0551.2 MA0551 2 HY5 Arabidopsis thaliana
Group Basic
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0508.1

ChIP-seq Centrality
-log(P-value): 6116.78

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0508.1

ChIP-seq Centrality
-log(P-value): 6009.8

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: