Detailed information of matrix profile MA0162.2

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Profile summary
Name: EGR1
Matrix ID: MA0162.2
Class: C2H2
Family: Three-zinc
Collection: CORE
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Validation: 16041365
Uniprot ID: P18146  
Source: ENCODE
Comment:

Sequence logo

Frequency matrix

         
A [ 1722 987 3289 304 243 1491 404 0 2505 449 490 2797 2544 2347 ]
C [ 1913 1420 6599 0 0 611 0 0 6840 0 0 2250 1359 3083 ]
G [ 5595 9849 0 11952 8361 10154 11852 12256 0 11574 10431 6049 6847 5728 ]
T [ 3026 0 2368 0 3652 0 0 0 2911 233 1335 1160 1506 1098 ]

Binding sites information

   

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA0162.1 MA0162 1 Egr1 Mus musculus
Three-zinc C2H2
MA0162.2 MA0162 2 EGR1 Homo sapiens
Three-zinc C2H2
MA0162.3 MA0162 3 EGR1 Homo sapiens
Three-zinc C2H2
MA0162.4 MA0162 4 EGR1 Homo sapiens
Three-zinc C2H2
MA0162.5 MA0162 5 EGR1 Homo sapiens
Three-zinc C2H2
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0020.1

ChIP-seq Centrality
-log(P-value): 17427.9

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0020.1

ChIP-seq Centrality
-log(P-value): 17298.7

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: