Detailed information of deep learning profile BP000316.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000316.1
Cell line/tissue: SK-N-SH
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DXQ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Contribution weight matrix (CWM)

     
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Frequency matrix

         
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Hypothetical CWM

       
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Other motifs identified by TF-MoDISco

Number of seqlets: 832

PFM

       
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CWM

       
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HCWM

       
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Number of seqlets: 154

PFM

       
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CWM

       
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HCWM

       
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Number of seqlets: 140

PFM

       
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CWM

       
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HCWM

       
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Number of seqlets: 30

PFM

       
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CWM

       
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HCWM

       
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Unique motifs

This is a placeholder for the motifs that are found to be specific to this particular model, i.e., not found in other models trained for CTCF.

448 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000247.1 CTCF ENCSR000DMY D721Med Homo sapiens MA0139.2
BP000248.1 CTCF ENCSR000DNA A549 Homo sapiens MA0139.2
BP000249.1 CTCF ENCSR000DNC keratinocyte Homo sapiens MA0139.2
BP000250.1 CTCF ENCSR000DND pancreas Homo sapiens MA0139.2
BP000251.1 CTCF ENCSR000DNI spleen Homo sapiens MA0139.2
BP000267.1 CTCF ENCSR000DPF A549 Homo sapiens MA0139.2
BP000268.1 CTCF ENCSR000DPG AG04449 Homo sapiens MA0139.2
BP000269.1 CTCF ENCSR000DPM AG04450 Homo sapiens MA0139.2
BP000270.1 CTCF ENCSR000DPP AG09309 Homo sapiens MA0139.2
BP000271.1 CTCF ENCSR000DPS AG09319 Homo sapiens MA0139.2
Showing 10 profiles of page 6 from 45 pages