Detailed information of deep learning profile BP000283.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12874 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000283.1
Cell line/tissue: GM12874
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DRR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Contribution weight matrix (CWM)

     
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Frequency matrix

         
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Hypothetical CWM

       
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Other motifs identified by TF-MoDISco

Number of seqlets: 665

PFM

       
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CWM

       
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HCWM

       
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Number of seqlets: 282

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 38

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 34

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

Number of seqlets: 32

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
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T [ ]

HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 20

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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T [ ]

HCWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Unique motifs

This is a placeholder for the motifs that are found to be specific to this particular model, i.e., not found in other models trained for CTCF.

448 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000233.1 CTCF ENCSR000DMA K562 Homo sapiens MA0139.2
BP000234.1 CTCF ENCSR000DMC kidney Homo sapiens MA0139.2
BP000235.1 CTCF ENCSR000DME LNCaP clone FGC Homo sapiens MA0139.2
BP000236.1 CTCF ENCSR000DMF LNCaP clone FGC Homo sapiens MA0139.2
BP000237.1 CTCF ENCSR000DMH lung Homo sapiens MA0139.2
BP000239.1 CTCF ENCSR000DML MCF-7 Homo sapiens MA0139.2
BP000241.1 CTCF ENCSR000DMO MCF-7 Homo sapiens MA0139.2
BP000244.1 CTCF ENCSR000DMR MCF-7 Homo sapiens MA0139.2
BP000245.1 CTCF ENCSR000DMS MCF-7 Homo sapiens MA0139.2
BP000246.1 CTCF ENCSR000DMV MCF-7 Homo sapiens MA0139.2
Showing 10 profiles of page 5 from 45 pages