Detailed information of deep learning profile BP000227.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000227.1
Cell line/tissue: HeLa-S3
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000DLO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Contribution weight matrix (CWM)

     
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Frequency matrix

       
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Hypothetical CWM

     
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Other motifs identified by TF-MoDISco

Number of seqlets: 361

CWM

       
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PFM

       
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HCWM

     
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Number of seqlets: 26

CWM

       
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PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

     
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 22

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

     
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 36

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
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PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

     
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

Number of seqlets: 35

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

     
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

Number of seqlets: 22

CWM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
C [ ]
G [ ]
T [ ]

HCWM

     
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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G [ ]
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Unique motifs

This is a placeholder for the motifs that are found to be specific to this particular model, i.e., not found in other models trained for CTCF.

448 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000571.1 CTCF ENCSR089DTY omental fat pad Homo sapiens MA0139.2
BP000572.1 CTCF ENCSR089NBS heart right ventricle Homo sapiens MA0139.2
BP000576.1 CTCF ENCSR092VKJ middle frontal area 46 Homo sapiens MA0139.2
BP000579.1 CTCF ENCSR094PSL middle frontal area 46 Homo sapiens MA0139.2
BP000589.1 CTCF ENCSR102CSD transverse colon Homo sapiens MA0139.2
BP000592.1 CTCF ENCSR105HEC activated B cell Homo sapiens MA0139.2
BP000593.1 CTCF ENCSR105KGD heart right ventricle Homo sapiens MA0139.2
BP000594.1 CTCF ENCSR107GWZ HCT116 Homo sapiens MA0139.2
BP000600.1 CTCF ENCSR113COJ pancreas Homo sapiens MA0139.2
BP000603.1 CTCF ENCSR116AKQ CD8-positive and alpha-beta T cell Homo sapiens MA0139.2
Showing 10 profiles of page 15 from 45 pages