Detailed information of deep learning profile BP000002.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000002.1
Cell line/tissue: GM12878
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AKB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Contribution weight matrix (CWM)

     
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Frequency matrix

       
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Hypothetical CWM

     
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Other motifs identified by TF-MoDISco

Number of seqlets: 477

CWM

       
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PFM

       
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HCWM

     
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Number of seqlets: 48

CWM

       
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PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

     
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Number of seqlets: 83

CWM

       
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PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

     
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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Number of seqlets: 30

CWM

       
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PFM

       
A [ A placeholder to be filled. All the buttons will become functional after matrix data is populated. ]
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HCWM

     
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Unique motifs

This is a placeholder for the motifs that are found to be specific to this particular model, i.e., not found in other models trained for CTCF.

448 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001163.1 CTCF ENCSR715FHW middle frontal area 46 Homo sapiens MA0139.2
BP001168.1 CTCF ENCSR718SDR heart left ventricle Homo sapiens MA0139.2
BP001170.1 CTCF ENCSR720USO prostate gland Homo sapiens MA0139.2
BP001171.1 CTCF ENCSR721AHD sigmoid colon Homo sapiens MA0139.2
BP001172.1 CTCF ENCSR724YTA middle frontal area 46 Homo sapiens MA0139.2
BP001179.1 CTCF ENCSR736PZW left lung Homo sapiens MA0139.2
BP001184.1 CTCF ENCSR740GKG middle frontal area 46 Homo sapiens MA0139.2
BP001190.1 CTCF ENCSR744YJR thyroid gland Homo sapiens MA0139.2
BP001195.1 CTCF ENCSR753RME testis Homo sapiens MA0139.2
BP001200.1 CTCF ENCSR755WXO middle frontal area 46 Homo sapiens MA0139.2
Showing 10 profiles of page 36 from 45 pages