JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0366.1 RGM1 Saccharomyces cerevisiae C2H2
MA0367.1 RGT1 Saccharomyces cerevisiae C6
MA0367.2 RGT1 Saccharomyces cerevisiae C6
MA0368.1 RIM101 Saccharomyces cerevisiae C2H2 Factors
MA0369.1 RLM1 Saccharomyces cerevisiae MADS Regulators
MA0369.2 RLM1 Saccharomyces cerevisiae MADS Regulators
MA0370.1 RME1 Saccharomyces cerevisiae C2H2 Factors
MA0371.1 ROX1 Saccharomyces cerevisiae High-mobility
MA0372.1 RPH1 Saccharomyces cerevisiae C2H2 Other
MA0372.2 RPH1 Saccharomyces cerevisiae C2H2 Other
Showing 10 profiles of page 72 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.