JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0137.1 STAT1 Homo sapiens STAT STAT
MA0137.2 STAT1 Homo sapiens STAT STAT
MA0137.3 STAT1 Homo sapiens STAT STAT
MA0137.4 STAT1 Homo sapiens STAT STAT
MA0138.1 REST Homo sapiens C2H2 Factors
MA0138.2 REST Homo sapiens C2H2 Factors
MA0138.3 REST Homo sapiens C2H2 Factors
MA0139.1 CTCF Homo sapiens C2H2 More
MA0139.2 CTCF Homo sapiens C2H2 More
MA0140.1 Gata1::Tal1 Mus musculus Other::Basic C4-GATA-related::Tal-related
Showing 10 profiles of page 35 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.