JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1425.2 HYH Arabidopsis thaliana Basic Group
MA1426.1 MYB124 Arabidopsis thaliana Tryptophan MYB
MA1426.2 MYB124 Arabidopsis thaliana Tryptophan MYB
MA1427.1 NAC028 Arabidopsis thaliana GCM NAC
MA1427.2 NAC028 Arabidopsis thaliana GCM NAC
MA1427.3 NAC028 Arabidopsis thaliana GCM NAC
MA1428.1 TCP8 Arabidopsis thaliana TCP
MA1428.2 TCP8 Arabidopsis thaliana TCP
MA1430.1 TB1 Oryza sativa TCP
MA1430.2 TB1 Oryza sativa TCP
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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

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Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.