JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0069.1 PAX6 Homo sapiens Paired Paired
MA0070.1 PBX1 Homo sapiens Homeo TALE-type
MA0070.2 PBX1 Homo sapiens Homeo TALE-type
MA0071.1 RORA Homo sapiens Nuclear Thyroid
MA0072.1 RORA Homo sapiens Nuclear Thyroid
MA0072.2 RORA Homo sapiens Nuclear Thyroid
MA0073.1 RREB1 Homo sapiens C2H2 Factors
MA0073.2 RREB1 Homo sapiens C2H2 Factors
MA0074.1 RXRA::VDR Homo sapiens Nuclear RXR-related::Thyroid
MA0075.1 Prrx2 Mus musculus Homeo Paired-related
Showing 10 profiles of page 18 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.