JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0047.3 FOXA2 Homo sapiens Fork FOX
MA0047.4 FOXA2 Homo sapiens Fork FOX
MA0048.1 NHLH1 Homo sapiens Basic Tal-related
MA0048.2 NHLH1 Homo sapiens Basic Tal-related
MA0048.3 NHLH1 Homo sapiens Basic Tal-related
MA0049.1 hb Drosophila melanogaster C2H2 Factors
MA0050.1 IRF1 Homo sapiens Tryptophan Interferon-regulatory
MA0050.2 IRF1 Homo sapiens Tryptophan Interferon-regulatory
MA0050.3 Irf1 Mus musculus Tryptophan Interferon-regulatory
MA0050.4 Irf1 Mus musculus Tryptophan Interferon-regulatory
Showing 10 profiles of page 13 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.