JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0256.1 zen Drosophila melanogaster Homeo HOX
MA0257.1 zen2 Drosophila melanogaster Homeo HOX
MA0257.2 zen2 Drosophila melanogaster Homeo HOX
MA0258.1 ESR2 Homo sapiens Nuclear Steroid
MA0258.2 ESR2 Homo sapiens Nuclear Steroid
MA0259.1 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic PAS
MA0259.2 ARNT::HIF1A Homo sapiens Oryctolagus cuniculus Mus musculus Rattus rattus Basic PAS
MA0260.1 che-1 Caenorhabditis elegans C2H2 More
MA0261.1 lin-14 Caenorhabditis elegans
MA0262.1 mab-3 Caenorhabditis elegans DM-type DMRT
Showing 10 profiles of page 54 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.