JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0235.1 onecut Drosophila melanogaster Homeo HD-CUT
MA0236.1 otp Drosophila melanogaster Homeo Paired-related
MA0237.1 pan Drosophila melanogaster High-mobility High
MA0237.2 pan Drosophila melanogaster High-mobility High
MA0238.1 pb Drosophila melanogaster Homeo HOX
MA0239.1 prd Drosophila melanogaster Paired
MA0239.2 prd Drosophila melanogaster Paired
MA0240.1 repo Drosophila melanogaster Homeo Paired-related
MA0241.1 ro Drosophila melanogaster Homeo HOX
MA0242.1 Bgb::run Drosophila melanogaster Runt Runt-related
Showing 10 profiles of page 51 from 428 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.