JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2377.1 cassava45561.m1 NA TCP
MA2378.1 CRF3 Arabidopsis thaliana AP2/EREBP ERF/DREB
MA2379.1 DOF3.1 Arabidopsis thaliana Other DOF
MA2380.1 DOF4.7 Arabidopsis thaliana Other DOF
MA2381.1 e_gw1.170.52.1 Physcomitrium patens Other DOF
MA2382.1 e_gw1.209.40.1 Physcomitrium patens Basic bHLH
MA2383.1 e_gw1.392.16.1 Physcomitrium patens Other DOF
MA2384.1 estExt_Genewise1.C_2060077 Physcomitrium patens Basic bZIP
MA2385.1 estExt_gwp_gw1.C_220046 Physcomitrium patens Fork E2F
MA2386.1 estExt_gwp_gw1.C_550163 Physcomitrium patens AP2/EREBP ERF/DREB
Showing 10 profiles of page 421 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.