JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0161.2 NFIC Homo sapiens SMAD/NF-1 Nuclear
MA0161.3 NFIC Homo sapiens SMAD/NF-1 Nuclear
MA0162.1 Egr1 Mus musculus C2H2 Three-zinc
MA0162.2 EGR1 Homo sapiens C2H2 Three-zinc
MA0162.3 EGR1 Homo sapiens C2H2 Three-zinc
MA0162.4 EGR1 Homo sapiens C2H2 Three-zinc
MA0162.5 EGR1 Homo sapiens C2H2 Three-zinc
MA0163.1 PLAG1 Homo sapiens C2H2 More
MA0164.1 Nr2e3 Mus musculus Nuclear RXR-related
MA0164.2 Nr2e3 Mus musculus Nuclear RXR-related
Showing 10 profiles of page 42 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.