JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2337.1 Nr1h3 Mus musculus Nuclear Thyroid
MA2338.1 Ppara Mus musculus Nuclear Thyroid
MA2339.1 Nanog Mus musculus Homeo NK
MA2340.1 Zbtb2 Mus musculus C2H2 Factors
MA2341.1 FEZF2 Homo sapiens C2H2 More
MA2342.1 URI Arabidopsis thaliana Basic bHLH
MA2343.1 MYB3R3 Arabidopsis thaliana Tryptophan MYB
MA2344.1 REV Arabidopsis thaliana Homeo HD-ZIP
MA2345.1 OS02G0104500 Oryza sativa Tryptophan Trihelix
MA2346.1 OsTCP7 Oryza sativa TCP
Showing 10 profiles of page 417 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.