JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0157.2 FOXO3 Homo sapiens Fork FOX
MA0157.3 Foxo3 Mus musculus Fork FOX
MA0157.4 Foxo3 Mus musculus Fork FOX
MA0158.1 HOXA5 Homo sapiens Mus musculus Homeo HOX
MA0158.2 HOXA5 Homo sapiens Homeo HOX
MA0159.1 RARA::RXRA Homo sapiens Nuclear Thyroid::RXR-related
MA0160.1 NR4A2 Homo sapiens Mus musculus Rattus norvegicus Nuclear NGFI-B-related
MA0160.2 NR4A2 Homo sapiens Nuclear NGFI-B-related
MA0160.3 NR4A2 Homo sapiens Nuclear NGFI-B-related
MA0161.1 NFIC Homo sapiens SMAD/NF-1 Nuclear
Showing 10 profiles of page 41 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.