JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2257.1 Mitf Drosophila melanogaster Basic bHLH-ZIP
MA2258.1 Mnt Drosophila melanogaster Basic bHLH-ZIP
MA2259.1 org-1 Drosophila melanogaster T-Box TBX1-related
MA2260.1 pdm3 Drosophila melanogaster Homeo POU
MA2261.1 phol Drosophila melanogaster C2H2 More
MA2262.1 pnt Drosophila melanogaster Tryptophan Ets-related
MA2263.1 Poxm Drosophila melanogaster Paired Paired
MA2264.1 Rel Drosophila melanogaster Rel NF-kappaB-related
MA2265.1 retn Drosophila melanogaster ARID ARID-related
MA2266.1 Rfx Drosophila melanogaster Fork RFX-related
Showing 10 profiles of page 409 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.