JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2237.1 FoxP Drosophila melanogaster Fork FOX
MA2238.1 GATAe Drosophila melanogaster Other C4-GATA-related
MA2239.1 gsb Drosophila melanogaster Paired Paired
MA2240.1 Hey Drosophila melanogaster Basic Hairy-related
MA2241.1 HLH4C Drosophila melanogaster Basic Tal-related
MA2242.1 Hnf4 Drosophila melanogaster Nuclear RXR-related
MA2243.1 Hr38 Drosophila melanogaster Nuclear NGFI-B-related
MA2244.1 Hr39 Drosophila melanogaster Nuclear GCNF-related
MA2245.1 Hr78 Drosophila melanogaster Nuclear RXR-related
MA2246.1 Jra Drosophila melanogaster Basic Jun-related
Showing 10 profiles of page 407 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.