JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2177.1 nfya-1 Caenorhabditis elegans Heteromeric Heteromeric
MA2178.1 sta-1 Caenorhabditis elegans STAT STAT
MA2179.1 ceh-10 Caenorhabditis elegans Homeo Paired-related
MA2180.1 F10B5.3 Caenorhabditis elegans C2H2 Three-zinc
MA2181.1 lsy-2 Caenorhabditis elegans C2H2 More
MA2182.1 nfi-1 Caenorhabditis elegans SMAD/NF-1 Nuclear
MA2183.1 nhr-33 Caenorhabditis elegans Nuclear RXR-related
MA2184.1 sox-3 Caenorhabditis elegans High-mobility SOX-related
MA2185.1 tbx-37 Caenorhabditis elegans T-Box TBX6-related
MA2186.1 tbx-38 Caenorhabditis elegans T-Box TBX6-related
Showing 10 profiles of page 401 from 428 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.