JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2147.1 nsy-7 Caenorhabditis elegans Homeo Paired-related
MA2148.1 odd-2 Caenorhabditis elegans C2H2 More
MA2149.1 odr-7 Caenorhabditis elegans Nuclear RXR-related
MA2150.1 pag-3 Caenorhabditis elegans C2H2 More
MA2151.1 pax-2 Caenorhabditis elegans Paired Paired
MA2152.1 ref-1 Caenorhabditis elegans Basic Hairy-related
MA2153.1 sex-1 Caenorhabditis elegans Nuclear Thyroid
MA2154.1 snai-1 Caenorhabditis elegans C2H2 More
MA2155.1 sptf-3 Caenorhabditis elegans C2H2 Three-zinc
MA2156.1 xbp-1 Caenorhabditis elegans Basic XBP-1-related
Showing 10 profiles of page 398 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.