JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2137.1 klu-1 Caenorhabditis elegans C2H2 More
MA2138.1 klu-2 Caenorhabditis elegans C2H2 Three-zinc
MA2139.1 let-381 Caenorhabditis elegans Fork FOX
MA2140.1 lin-31 Caenorhabditis elegans Fork FOX
MA2141.1 lin-48 Caenorhabditis elegans C2H2 More
MA2142.1 nhr-142 Caenorhabditis elegans Nuclear RXR-related
MA2143.1 nhr-25 Caenorhabditis elegans Nuclear FTZF1related(NR5A)
MA2144.1 nhr-5 Caenorhabditis elegans Nuclear RXR-related
MA2145.1 nhr-70 Caenorhabditis elegans Nuclear RXR-related
MA2146.1 nhr-86 Caenorhabditis elegans Nuclear Steroid
Showing 10 profiles of page 397 from 428 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.