JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA2127.1 atf-2 Caenorhabditis elegans Basic CEBP-related
MA2128.1 ceh-18 Caenorhabditis elegans Homeo POU
MA2129.1 ceh-23 Caenorhabditis elegans Homeo NK
MA2130.1 dmd-10 Caenorhabditis elegans DM-type DMRT
MA2131.1 egl-38 Caenorhabditis elegans Paired Paired
MA2132.1 egrh-1 Caenorhabditis elegans C2H2 Three-zinc
MA2133.1 elt-7 Caenorhabditis elegans Other C4-GATA-related
MA2134.1 end-3 Caenorhabditis elegans Other C4-GATA-related
MA2135.1 jun-1 Caenorhabditis elegans Basic Jun-related
MA2136.1 klf-3 Caenorhabditis elegans C2H2 Three-zinc
Showing 10 profiles of page 396 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.