JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0112.1 ESR1 Xenopus laevis Xenopus tropicalis Gallus gallus Homo sapiens Bos taurus Oryctolagus cuniculus Mus musculus Rattus norvegicus Nuclear Steroid
MA0112.2 ESR1 Homo sapiens Nuclear Steroid
MA0112.3 ESR1 Homo sapiens Nuclear Steroid
MA0112.4 ESR1 Homo sapiens Nuclear Steroid
MA0113.1 NR3C1 Oncorhynchus mykiss Gallus gallus Homo sapiens Mus musculus Rattus norvegicus Nuclear Steroid
MA0113.2 NR3C1 Mus musculus Nuclear Steroid
MA0113.3 NR3C1 Homo sapiens Nuclear Steroid
MA0113.4 NR3C1 Homo sapiens Nuclear Steroid
MA0114.1 HNF4A NA Nuclear RXR-related
MA0114.2 HNF4A Homo sapiens Nuclear RXR-related
Showing 10 profiles of page 30 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.