JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA1525.1 NFATC4 Homo sapiens Rel NFAT-related
MA1525.2 NFATC4 Homo sapiens Rel NFAT-related
MA1525.3 NFATC4 Homo sapiens Rel NFAT-related
MA1527.1 NFIC Homo sapiens SMAD/NF-1 Nuclear
MA1527.2 NFIC Homo sapiens SMAD/NF-1 Nuclear
MA1528.1 NFIX Homo sapiens SMAD/NF-1 Nuclear
MA1528.2 NFIX Homo sapiens SMAD/NF-1 Nuclear
MA1529.1 NHLH2 Homo sapiens Basic Tal-related
MA1529.2 NHLH2 Homo sapiens Basic Tal-related
MA1530.1 NKX6-3 Homo sapiens Homeo NK
Showing 10 profiles of page 293 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.