JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0051.1 IRF2 Homo sapiens Tryptophan Interferon-regulatory
MA0051.2 IRF2 Homo sapiens Tryptophan Interferon-regulatory
MA0052.1 MEF2A Homo sapiens MADS Regulators
MA0052.2 MEF2A Homo sapiens MADS Regulators
MA0052.3 MEF2A Homo sapiens MADS Regulators
MA0052.4 MEF2A Homo sapiens MADS Regulators
MA0052.5 MEF2A Homo sapiens MADS Regulators
MA0053.1 MNB1A Zea mays Other DOF
MA0054.1 myb.Ph3 Petunia x hybrida Tryptophan Myb
MA0056.1 MZF1 Homo sapiens C2H2 More
Showing 10 profiles of page 14 from 428 pages

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.