JASPAR CORE

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Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0651.1 HOXC11 Homo sapiens Homeo HOX
MA0651.2 HOXC11 Homo sapiens Homeo HOX
MA0651.3 HOXC11 Homo sapiens Homeo HOX
MA0652.1 IRF8 Homo sapiens Tryptophan Interferon-regulatory
MA0652.2 IRF8 Homo sapiens Tryptophan Interferon-regulatory
MA0653.1 IRF9 Homo sapiens Tryptophan Interferon-regulatory
MA0654.1 ISX Homo sapiens Homeo Paired-related
MA0654.2 ISX Homo sapiens Homeo Paired-related
MA0655.1 JDP2 Homo sapiens Basic Fos-related
MA0656.1 JDP2 Homo sapiens Basic Fos-related
Showing 10 profiles of page 129 from 428 pages

Analyze selected profiles

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Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.