JASPAR CORE

  1. Home
  2. Collection CORE

Total 4279 profiles

Display profiles
ID Name Species Class Family Sequence logo
MA0001.1 AGL3 Arabidopsis thaliana MADS Type
MA0001.2 AGL3 Arabidopsis thaliana MADS Type
MA0001.3 AGL3 Arabidopsis thaliana MADS Type
MA0002.1 RUNX1 Homo sapiens Runt Runt-related
MA0002.2 Runx1 Mus musculus Runt Runt-related
MA0002.3 Runx1 Mus musculus Runt Runt-related
MA0003.1 TFAP2A Homo sapiens Basic AP-2
MA0003.2 TFAP2A Homo sapiens Basic AP-2
MA0003.3 TFAP2A Homo sapiens Basic AP-2
MA0003.4 TFAP2A Homo sapiens Basic AP-2
Showing 10 profiles of page 1 from 428 pages

Analyze selected profiles

Please select matrix profiles on the left side to add to your cart or perform the following analysis.

Add to cart

You have 0 profile(s) in your cart. You can add profiles to the cart to download or perform analysis.
View cart

Scan

Input a (FASTA-formatted) sequence to scan with selected matrix models.

(3000 nucleotides left)
Relative profile score threshold %

Cluster

Cluster selected models using STAMP tool.



You can use the Newick tree from results to visualize on PhyloTree

Randomize

Create random matrix models based on selected models.

Permute

Create models with permuted columns from selected models.

Download

Download the PFMs of the model(s) selected in four different formats.